Motif Conformation Finder
latest
motif_conformations
pdb_io
internal_coord
Motif Conformation Finder
Index
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Index
_
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A
|
B
|
C
|
D
|
F
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G
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H
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I
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M
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O
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P
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Q
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R
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S
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T
|
W
_
__init__() (internal_coord.CoordinateData method)
(internal_coord.InternalCoordinates method)
(internal_coord.ResidueData method)
(pdb_io.CsvWriter method)
(pdb_io.PdbFileQuery method)
(pdb_io.PdbQueries method)
(pdb_io.PdbQueryCsv method)
(pdb_io.PdbReader method)
(pdb_io.PolypeptideEntry method)
A
add_query() (pdb_io.PdbQueries method)
B
backbone_angle_keys (internal_coord.InternalCoordinates attribute)
,
[1]
backbone_bonds (internal_coord.InternalCoordinates attribute)
,
[1]
C
chain (internal_coord.ResidueData attribute)
(pdb_io.PolypeptideEntry attribute)
chain_ids (pdb_io.PdbFileQuery attribute)
close() (pdb_io.CsvWriter method)
coordinate_id (internal_coord.CoordinateData attribute)
coordinate_value (internal_coord.CoordinateData attribute)
CoordinateData (class in internal_coord)
coordinates (internal_coord.ResidueData attribute)
CsvWriter (class in pdb_io)
custom_format() (in module pdb_io)
D
directory_queries (pdb_io.PdbReader attribute)
,
[1]
(pdb_io.PdbReader property)
F
fields (pdb_io.CsvWriter attribute)
,
[1]
file_path (pdb_io.PdbFileQuery attribute)
find_motif() (pdb_io.PolypeptideEntry method)
G
get_arguments() (in module motif_conformations)
get_bonds() (in module internal_coord)
get_coordinate() (in module internal_coord)
get_coordinates() (internal_coord.InternalCoordinates method)
get_polypeptides() (pdb_io.PdbFileQuery method)
get_sidechain_triads() (in module internal_coord)
get_structure() (pdb_io.PdbFileQuery method)
get_triads() (in module internal_coord)
H
has_header (pdb_io.PdbQueryCsv attribute)
,
[1]
I
internal_coord
module
InternalCoordinates (class in internal_coord)
M
model (internal_coord.ResidueData attribute)
(pdb_io.PolypeptideEntry attribute)
module
internal_coord
motif_conformations
pdb_io
motif_conformations
module
motif_to_coordinates() (in module motif_conformations)
O
output_handle (pdb_io.CsvWriter attribute)
,
[1]
P
parser (pdb_io.PdbReader attribute)
,
[1]
path (pdb_io.PdbQueryCsv attribute)
,
[1]
pdb_directory (pdb_io.PdbReader attribute)
,
[1]
pdb_id (pdb_io.PolypeptideEntry attribute)
pdb_io
module
PdbFileQuery (class in pdb_io)
PdbQueries (class in pdb_io)
PdbQueryCsv (class in pdb_io)
PdbReader (class in pdb_io)
polypeptide (pdb_io.PolypeptideEntry attribute)
PolypeptideEntry (class in pdb_io)
position (internal_coord.ResidueData attribute)
protein (internal_coord.ResidueData attribute)
protein_id (pdb_io.PdbFileQuery attribute)
Q
query_list (pdb_io.PdbQueries attribute)
R
read (pdb_io.PdbQueryCsv attribute)
,
[1]
(pdb_io.PdbQueryCsv property)
read_file() (pdb_io.PdbReader method)
residue_name (internal_coord.ResidueData attribute)
ResidueData (class in internal_coord)
S
sequence (pdb_io.PolypeptideEntry property)
sidechain_angle_keys (internal_coord.InternalCoordinates attribute)
,
[1]
sidechain_bonds (internal_coord.InternalCoordinates attribute)
,
[1]
split_coordinates() (in module internal_coord)
T
text_handler (pdb_io.PdbReader attribute)
,
[1]
W
write_line() (pdb_io.CsvWriter method)
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