internal_coord

Read and write CSV files and parse protein structures

Author: Adriaan Lategan

Functions

get_bonds(hedra)	Extract groups of 2 atoms from the biopython internal coordinate data
get_coordinate(residue_letter, func, ...)	internal coordinate values for the specified atom chains
get_sidechain_triads(sidechain_atom_groups)	Extract groups of 3 atoms from the biopython internal coordinate sidechain data
get_triads(ic_data)	Extract groups of 3 atoms from the biopython internal coordinate data
split_coordinates(coordinate_type, coordinates)	generate CoordinateData object of each coordinate value

Classes

CoordinateData(coordinate_type, ...)	Object for protein structure coordinates .
InternalCoordinates([backbone_atom_chains, ...])	Object for accessing residue internal coordinates
ResidueData(protein, model, chain, position, ...)	Object identifying an amino acid residue and recording its protein structure coordinates