pdb_io

Read and write CSV files and parse protein structures

Author: Adriaan Lategan

Functions

custom_format(message, category, filename, ...)

Overwrite the format of Warnings

Classes

CsvWriter(path_string, fields)	Object for writing values to defined fields in a csv file
PdbFileQuery(protein_id, file_path, chain_ids)	Object representing a specific proteins structure file and the amino protein chain entities that should be parsed from it
PdbQueries(query_list)	List with unique protein structure file query entries
PdbQueryCsv(chain_list[, has_header])	Object for parsing csv files listing protein entity IDs, paths to protein structure files, and protein chain IDs
PdbReader(pdb_directory[, pdb_type, gzipped])	Object for parsing protein structures in pdb or cif format from a specific directory
PolypeptideEntry(pdb_id, model, chain, ...)	Object representing a contiguous polymer of amino acids, with methods to extract amino acid sequences from it